Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKB63920.1Glycosyltransferase. (607 aa)    
Predicted Functional Partners:
AKB63919.1
Galactose-1-phosphate uridylyltransferase.
       0.787
AKB63640.1
Alpha-amylase.
 
     0.609
AKB63639.1
Alpha-amylase.
 
     0.589
AKB65629.1
Hypothetical protein.
  
     0.554
AKB63319.1
CAAX amino terminal protease family protein.
  
     0.534
AKB66396.1
Hypothetical protein.
  
     0.524
AKB63349.1
CAAX amino terminal protease family protein.
  
     0.516
AKB65630.1
Hypothetical protein.
  
     0.507
AKB63312.1
CAAX amino terminal protease family protein.
  
     0.494
AKB64987.1
Cell surface protein.
  
     0.490
Your Current Organism:
Methanosarcina mazei
NCBI taxonomy Id: 213585
Other names: M. mazei S-6, Methanosarcina mazei S-6
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