Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKB63927.1Transposase. (349 aa)    
Predicted Functional Partners:
rps15
SSU ribosomal protein S13e (S15p).
   
   0.568
AKB63926.1
Haloacid dehalogenase-like hydrolase.
       0.536
AKB65348.1
Mobile element protein.
  
     0.507
AKB64078.1
Mobile element protein.
  
     0.488
AKB65087.1
Hypothetical protein.
  
     0.438
AKB64113.1
Hypothetical protein.
  
     0.436
AKB64112.1
Hypothetical protein.
  
     0.426
AKB65349.1
Mobile element protein.
 
   
 0.405
AKB64390.1
Hypothetical protein.
  
     0.400
Your Current Organism:
Methanosarcina mazei
NCBI taxonomy Id: 213585
Other names: M. mazei S-6, Methanosarcina mazei S-6
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