STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKB64000.1Translation initiation inhibitor. (139 aa)    
Predicted Functional Partners:
fusA
Translation elongation factor 2; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 s [...]
   
 0.870
AKB65281.1
Ribonuclease PH.
  
 
 0.790
AKB63840.1
Acetolactate synthase small subunit.
    
 0.750
rrp42
Putative exosome complex exonuclease 2; Non-catalytic component of the exosome, which is a complex involved in RNA degradation. Contributes to the structuring of the Rrp41 active site.
    
   0.712
AKB63839.1
Acetolactate synthase large subunit.
    
 0.644
AKB65078.1
Acetolactate synthase large subunit; Belongs to the TPP enzyme family.
    
 0.644
AKB63664.1
Aldehyde dehydrogenase.
   
 0.614
AKB64476.1
Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
   
 0.614
AKB65555.1
Succinate-semialdehyde dehydrogenase [NADP+].
   
 0.614
AKB64002.1
Putative glutathione S-transferase-related transmembrane protein.
 
     0.584
Your Current Organism:
Methanosarcina mazei
NCBI taxonomy Id: 213585
Other names: M. mazei S-6, Methanosarcina mazei S-6
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