Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AKB64071.1Putative exonuclease, DNA ligase-associated. (339 aa)    
Predicted Functional Partners:
AKB65144.1
Putative phosphoglycerate mutase.
 
 0.932
AKB65876.1
PQQ enzyme repeat domain protein.
  
 
 0.840
gpmI
2,3-bisphosphoglycerate-independent phosphoglycerate mutase; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate; Belongs to the BPG-independent phosphoglycerate mutase family.
  
 0.833
AKB65428.1
WD-domain containing protein.
    
 0.816
AKB64424.1
Serine/threonine protein phosphatase BSU1.
 
 0.779
AKB64072.1
Hypothetical protein.
       0.766
AKB63764.1
Hypothetical protein.
  
 0.742
AKB66208.1
2',3'-cyclic nucleotide 3'-phosphodiesterase.
  
 0.742
AKB64073.1
RNase L inhibitor.
  
   0.678
rpoP
DNA-directed RNA polymerase subunit P; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal RpoP/eukaryotic RPC10 RNA polymerase subunit family.
  
 0.665
Your Current Organism:
Methanosarcina mazei
NCBI taxonomy Id: 213585
Other names: M. mazei S-6, Methanosarcina mazei S-6
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