STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKB64117.1Peptidyl-prolyl cis-trans isomerase. (184 aa)    
Predicted Functional Partners:
AKB64116.1
FKBP-type peptidyl-prolyl cis-trans isomerase SlyD.
 
    
0.786
rps10
SSU ribosomal protein S20e (S10p); Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.
 
  
 0.566
AKB65579.1
[NiFe] hydrogenase nickel incorporation-associated protein HypB.
    
 0.559
AKB65718.1
[NiFe] hydrogenase nickel incorporation-associated protein HypB.
    
 0.559
AKB64118.1
Peptidyl-prolyl cis-trans isomerase.
 
    
0.513
rps3ae
SSU ribosomal protein S3Ae; Belongs to the eukaryotic ribosomal protein eS1 family.
   
    0.478
AKB64115.1
Membrane protein, putative.
       0.460
tuf
Translation elongation factor 1 alpha subunit; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-Tu/EF-1A subfamily.
   
  
 0.451
rps28e
SSU ribosomal protein S28e; Belongs to the eukaryotic ribosomal protein eS28 family.
  
    0.450
AKB63432.1
Hydrogenase, group 4, HycE subunit, putative.
   
 
 0.434
Your Current Organism:
Methanosarcina mazei
NCBI taxonomy Id: 213585
Other names: M. mazei S-6, Methanosarcina mazei S-6
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