STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKB64129.1Transcriptional regulator, TrmB family. (280 aa)    
Predicted Functional Partners:
AKB64394.1
Sulfopyruvate decarboxylase - beta subunit.
  
    0.565
AKB63274.1
Mrr restriction system protein.
   
    0.553
AKB66480.1
Origin of replication recognition protein / Cell division control protein 6; Involved in regulation of DNA replication.
 
     0.487
AKB64552.1
Iron-sulfur cluster binding protein.
   
    0.482
nac
Nascent polypeptide-associated complex protein; Contacts the emerging nascent chain on the ribosome. Belongs to the NAC-alpha family.
 
     0.476
AKB64130.1
Protein-disulfide reductase.
       0.473
AKB66373.1
Bipolar DNA helicase.
 
     0.461
AKB64131.1
Hypothetical protein.
 
     0.449
AKB66013.1
Bipolar DNA helicase.
 
     0.448
AKB64128.1
Prephenate dehydratase.
       0.432
Your Current Organism:
Methanosarcina mazei
NCBI taxonomy Id: 213585
Other names: M. mazei S-6, Methanosarcina mazei S-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.