STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKB64153.1MATE family drug/sodium antiporter. (478 aa)    
Predicted Functional Partners:
gap
NAD(P)-dependent glyceraldehyde 3-phosphate dehydrogenase archaeal.
 
  
 0.612
AKB64744.1
ABC transporter, ATP-binding protein.
  
  
 0.588
AKB64152.1
Transcriptional regulator, TrmB family.
       0.558
AKB64151.1
Transcriptional regulator, MarR family.
  
  
 0.527
AKB65058.1
ABC transporter, ATP-binding protein.
  
  
 0.516
AKB65441.1
ABC transporter, ATP-binding protein.
  
  
 0.516
AKB65450.1
ABC transporter, ATP-binding protein.
  
  
 0.516
AKB65497.1
ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA.
  
  
 0.516
AKB65882.1
ABC transporter, ATP-binding protein.
  
  
 0.516
tbp
TATA-box binding protein; General factor that plays a role in the activation of archaeal genes transcribed by RNA polymerase. Binds specifically to the TATA box promoter element which lies close to the position of transcription initiation.
   
  
 0.508
Your Current Organism:
Methanosarcina mazei
NCBI taxonomy Id: 213585
Other names: M. mazei S-6, Methanosarcina mazei S-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.