STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKB64153.1MATE family drug/sodium antiporter. (478 aa)    
Predicted Functional Partners:
rpl2
LSU ribosomal protein L8e (L2p); One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.
   
 
 0.741
AKB64744.1
ABC transporter, ATP-binding protein.
  
  
 0.731
gap
NAD(P)-dependent glyceraldehyde 3-phosphate dehydrogenase archaeal.
 
  
 0.584
AKB64152.1
Transcriptional regulator, TrmB family.
       0.558
AKB64151.1
Transcriptional regulator, MarR family.
  
  
 0.515
AKB65058.1
ABC transporter, ATP-binding protein.
  
  
 0.500
AKB65441.1
ABC transporter, ATP-binding protein.
  
  
 0.500
AKB65450.1
ABC transporter, ATP-binding protein.
  
  
 0.500
AKB65497.1
ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA.
  
  
 0.500
AKB65882.1
ABC transporter, ATP-binding protein.
  
  
 0.500
Your Current Organism:
Methanosarcina mazei
NCBI taxonomy Id: 213585
Other names: M. mazei S-6, Methanosarcina mazei S-6
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.