Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AKB64187.1Radical SAM domain protein. (399 aa)    
Predicted Functional Partners:
AKB66136.1
Heme biosynthesis protein related to NirL and NirH.
 
 
 0.989
AKB66137.1
Heme biosynthesis protein related to NirD and NirG.
 
 
 0.984
AKB66144.1
Heme biosynthesis protein related to NirD and NirG.
 
 
 0.984
AKB66138.1
Radical SAM domain heme biosynthesis protein.
 
  
0.978
AKB66145.1
Radical SAM domain heme biosynthesis protein.
 
  
0.978
AKB66143.1
Heme biosynthesis protein related to NirL and NirH.
 
 
 0.904
AKB64188.1
Uroporphyrinogen-III synthase.
 
 
 0.843
AKB64189.1
Uroporphyrinogen-III methyltransferase; Belongs to the precorrin methyltransferase family.
 
  
 0.832
AKB65324.1
Ferrous iron transport protein A.
  
  
 0.476
AKB63788.1
Nitrogenase FeMo-cofactor scaffold and assembly protein NifN.
  
 
 0.407
Your Current Organism:
Methanosarcina mazei
NCBI taxonomy Id: 213585
Other names: M. mazei S-6, Methanosarcina mazei S-6
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