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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKB64204.1Hypothetical protein. (189 aa)    
Predicted Functional Partners:
AKB64203.1
Replication protein A (two OB fold, one zinc finger).
 
   
 0.953
AKB63393.1
Phosphoserine phosphatase.
  
     0.747
AKB66124.1
Replication factor-A protein 1.
 
   
 0.734
AKB65913.1
Hypothetical protein.
 
     0.733
AKB65386.1
Putative Zn-ribbon RNA-binding protein with a function in translation.
  
     0.731
AKB64055.1
HTH DNA-binding protein.
 
     0.730
AKB65728.1
Hypothetical protein.
  
     0.730
AKB63858.1
Oligosaccharyl transferase.
  
     0.721
AKB63859.1
Oligosaccharyl transferase.
  
     0.719
AKB63592.1
Hypothetical protein.
  
     0.709
Your Current Organism:
Methanosarcina mazei
NCBI taxonomy Id: 213585
Other names: M. mazei S-6, Methanosarcina mazei S-6
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