Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AKB64337.1Hypothetical protein. (76 aa)    
Predicted Functional Partners:
AKB63330.1
Glucose-1-phosphate thymidylyltransferase.
  
 0.623
AKB65152.1
Putative glycogen debranching enzyme, archaeal type, TIGR01561.
  
 0.476
AKB65859.1
Putative glycogen debranching enzyme, archaeal type, TIGR01561.
  
 0.476
AKB64341.1
Hypothetical protein.
  
 0.443
AKB64846.1
Glycogen debranching enzyme.
  
 0.443
AKB65096.1
Glycogen debranching enzyme.
  
 0.443
AKB64769.1
Glycogen phosphorylase.
  
 
 0.431
AKB63333.1
dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.
  
  
 0.421
AKB63291.1
ATP-dependent DNA helicase RecQ.
   
 
 0.411
hcp
Hydroxylamine reductase; Catalyzes the reduction of hydroxylamine to form NH(3) and H(2)O.
  
  
 0.411
Your Current Organism:
Methanosarcina mazei
NCBI taxonomy Id: 213585
Other names: M. mazei S-6, Methanosarcina mazei S-6
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