Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKB64362.1Hypothetical protein. (75 aa)    
Predicted Functional Partners:
AKB64361.1
Hypothetical protein.
 
     0.972
AKB63443.1
Hypothetical protein.
 
     0.806
AKB64498.1
Hypothetical protein.
  
     0.751
AKB64499.1
Hypothetical protein.
 
     0.731
AKB65958.1
Hypothetical protein.
 
     0.693
AKB64293.1
Hypothetical protein.
 
     0.610
AKB64360.1
Putative ATPase (AAA+ superfamily).
 
     0.582
AKB65957.1
Hypothetical protein.
  
     0.554
truB
tRNA pseudouridine 55 synthase; Could be responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 2 subfamily.
       0.520
Your Current Organism:
Methanosarcina mazei
NCBI taxonomy Id: 213585
Other names: M. mazei S-6, Methanosarcina mazei S-6
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