STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AKB64388.1Putative cytochrome c biogenesis factor, archaeal. (329 aa)    
Predicted Functional Partners:
AKB64389.1
Cytochrome c-type biogenesis protein, archaeal, distantly related to heme lyase subunit CcmF.
     
 0.915
AKB63708.1
Hypothetical protein.
      
 0.751
AKB65497.1
ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA.
      
 0.751
AKB63503.1
Cytochrome C-type biogenesis protein (ccdA), conjectural.
      
 0.527
AKB65651.1
Cytochrome C-type biogenesis protein (ccdA), conjectural.
      
 0.527
carS
Phosphatidate cytidylyltransferase; Catalyzes the formation of CDP-2,3-bis-(O-geranylgeranyl)-sn- glycerol (CDP-archaeol) from 2,3-bis-(O-geranylgeranyl)-sn-glycerol 1- phosphate (DGGGP) and CTP. This reaction is the third ether-bond- formation step in the biosynthesis of archaeal membrane lipids.
       0.513
AKB65499.1
Cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE.
      
 0.466
Your Current Organism:
Methanosarcina mazei
NCBI taxonomy Id: 213585
Other names: M. mazei S-6, Methanosarcina mazei S-6
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