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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKB64389.1Cytochrome c-type biogenesis protein, archaeal, distantly related to heme lyase subunit CcmF. (353 aa)    
Predicted Functional Partners:
AKB65498.1
ABC transporter involved in cytochrome c biogenesis, CcmB subunit.
 
  
 0.879
AKB65499.1
Cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE.
 
  
0.711
AKB64388.1
Putative cytochrome c biogenesis factor, archaeal.
       0.653
AKB63504.1
Putative thiol:disulfide oxidoreductase involved in cytochrome C-type biogenesis.
 
  
 0.542
AKB65802.1
Thioredoxin.
 
  
 0.539
AKB63405.1
Circadian oscillation regulator KaiB.
  
  
 0.466
AKB63406.1
Circadian oscillation regulator KaiB.
  
  
 0.466
AKB63776.1
Thiol-disulfide isomerase and thioredoxins; Does not function as a glutathione-disulfide oxidoreductase in the presence of glutathione and glutathione reductase. Has low thioredoxin activity in vitro.
  
  
 0.466
AKB64063.1
Thioredoxin.
  
  
 0.466
AKB65642.1
Thiol-disulfide isomerase and thioredoxins; Does not function as a glutathione-disulfide oxidoreductase in the presence of glutathione and glutathione reductase. Has low thioredoxin activity in vitro.
  
  
 0.466
Your Current Organism:
Methanosarcina mazei
NCBI taxonomy Id: 213585
Other names: M. mazei S-6, Methanosarcina mazei S-6
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