Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKB64414.1Hypothetical protein. (411 aa)    
Predicted Functional Partners:
truD
tRNA pseudouridine 13 synthase; Could be responsible for synthesis of pseudouridine from uracil-13 in transfer RNAs; Belongs to the pseudouridine synthase TruD family.
 
     0.791
AKB64415.1
Peptidyl-tRNA hydrolase, archaeal type.
       0.788
AKB65225.1
Hypothetical protein.
  
     0.707
AKB64637.1
Hypothetical protein.
  
     0.699
AKB65223.1
Hypothetical protein.
  
     0.685
AKB66237.1
Hypothetical protein.
  
     0.672
AKB66220.1
Hypothetical protein.
  
     0.669
AKB63354.1
Hypothetical protein.
  
     0.662
AKB66020.1
Hypothetical protein.
  
     0.662
AKB64987.1
Cell surface protein.
  
     0.654
Your Current Organism:
Methanosarcina mazei
NCBI taxonomy Id: 213585
Other names: M. mazei S-6, Methanosarcina mazei S-6
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