STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKB64458.1Deacetylase. (514 aa)    
Predicted Functional Partners:
AKB64457.1
N-methylhydantoinase (ATP-hydrolyzing).
 
 
 0.959
AKB65475.1
Chaperone protein.
    
 0.938
AKB66384.1
Helicase, SNF2/RAD54 family.
  
 0.908
AKB65070.1
Hypothetical protein.
 
 0.903
rpl40e
LSU ribosomal protein L40e; Belongs to the eukaryotic ribosomal protein eL40 family.
  
 0.892
AKB64479.1
Putative ankyrin repeat protein.
   
 0.890
AKB65428.1
WD-domain containing protein.
  
 0.877
AKB65876.1
PQQ enzyme repeat domain protein.
  
 0.877
smc
Chromosome partition protein smc; Required for chromosome condensation and partitioning. Belongs to the SMC family.
   
 0.840
AKB65093.1
Peptidyl-prolyl cis-trans isomerase.
  
 0.838
Your Current Organism:
Methanosarcina mazei
NCBI taxonomy Id: 213585
Other names: M. mazei S-6, Methanosarcina mazei S-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.