Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AKB64519.1Dipeptide-binding ABC transporter, periplasmic substrate-binding component; TCDB 3.A.1.5.2. (560 aa)    
Predicted Functional Partners:
AKB64518.1
Dipeptide-binding ABC transporter, periplasmic substrate-binding component; TCDB 3.A.1.5.2.
     
  0.984
AKB65332.1
ABC transporter, ATP-binding protein.
  
 0.965
AKB64517.1
Dipeptide transport system permease protein DppB; TCDB 3.A.1.5.2.
 
 0.930
AKB64516.1
Dipeptide transport system permease protein DppC; TCDB 3.A.1.5.2.
 
 0.921
AKB65334.1
Dipeptide transport system permease protein DppB; TCDB 3.A.1.5.2.
 
 0.861
AKB64515.1
Dipeptide transport ATP-binding protein DppD; TCDB 3.A.1.5.2.
 
  
 0.833
AKB64514.1
Dipeptide transport ATP-binding protein DppF; TCDB 3.A.1.5.2.
 
  
 0.830
AKB64558.1
Oligopeptide transport system permease protein OppB; TCDB 3.A.1.5.1.
 
 0.799
AKB65438.1
Oligopeptide transport system permease protein OppB; TCDB 3.A.1.5.1.
 
 0.795
AKB66022.1
Oligopeptide transport system permease protein OppB; TCDB 3.A.1.5.1.
 
 0.790
Your Current Organism:
Methanosarcina mazei
NCBI taxonomy Id: 213585
Other names: M. mazei S-6, Methanosarcina mazei S-6
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