STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKB64558.1Oligopeptide transport system permease protein OppB; TCDB 3.A.1.5.1. (314 aa)    
Predicted Functional Partners:
AKB65332.1
ABC transporter, ATP-binding protein.
 
 0.995
AKB64555.1
Oligopeptide transport system permease protein OppB; TCDB 3.A.1.5.1.
 
 0.989
AKB64557.1
Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA; TCDB 3.A.1.5.1.
 0.988
AKB64559.1
Oligopeptide transport system permease protein OppC; TCDB 3.A.1.5.1.
0.978
AKB65335.1
ABC transporter, solute-binding protein.
 0.977
AKB65333.1
Dipeptide transport system permease protein DppC; TCDB 3.A.1.5.2.
 0.965
AKB65439.1
Dipeptide transport system permease protein DppC; TCDB 3.A.1.5.2.
 0.958
AKB66023.1
Oligopeptide transport system permease protein OppC; TCDB 3.A.1.5.1.
 0.957
AKB64556.1
Oligopeptide transport ATP-binding protein OppF; TCDB 3.A.1.5.1.
 
 0.952
AKB64516.1
Dipeptide transport system permease protein DppC; TCDB 3.A.1.5.2.
 0.949
Your Current Organism:
Methanosarcina mazei
NCBI taxonomy Id: 213585
Other names: M. mazei S-6, Methanosarcina mazei S-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.