STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKB64560.1Putative permease (major facilitator superfamily). (418 aa)    
Predicted Functional Partners:
AKB65144.1
Putative phosphoglycerate mutase.
 
  
 0.592
AKB64558.1
Oligopeptide transport system permease protein OppB; TCDB 3.A.1.5.1.
     
 0.525
AKB64559.1
Oligopeptide transport system permease protein OppC; TCDB 3.A.1.5.1.
       0.510
AKB64987.1
Cell surface protein.
 
     0.473
AKB65600.1
Cell surface protein.
 
     0.460
AKB65465.1
Pap2 superfamily protein.
 
 
 0.452
ndk
Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate.
 
 
 0.439
AKB64557.1
Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA; TCDB 3.A.1.5.1.
     
 0.435
AKB66474.1
Haloacid dehalogenase superfamily protein.
 
   
 0.424
gap
NAD(P)-dependent glyceraldehyde 3-phosphate dehydrogenase archaeal.
   
 0.414
Your Current Organism:
Methanosarcina mazei
NCBI taxonomy Id: 213585
Other names: M. mazei S-6, Methanosarcina mazei S-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.