Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
AKB64576.1Putative DNA or RNA helicase of superfamily II. (727 aa)    
Predicted Functional Partners:
AKB65296.1
Type I restriction-modification system, restriction subunit R.
  
     0.622
AKB65223.1
Hypothetical protein.
  
     0.601
AKB65225.1
Hypothetical protein.
  
     0.575
AKB66153.1
Hypothetical protein.
  
     0.569
AKB65876.1
PQQ enzyme repeat domain protein.
  
     0.559
AKB65877.1
PQQ enzyme repeat domain protein.
  
     0.556
AKB66237.1
Hypothetical protein.
  
     0.536
AKB66220.1
Hypothetical protein.
  
     0.534
AKB63354.1
Hypothetical protein.
  
     0.509
AKB64637.1
Hypothetical protein.
  
     0.501
Your Current Organism:
Methanosarcina mazei
NCBI taxonomy Id: 213585
Other names: M. mazei S-6, Methanosarcina mazei S-6
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