Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKB64602.1Hypothetical protein. (695 aa)    
Predicted Functional Partners:
AKB66458.1
Archaeosortase A.
  
    0.778
AKB64707.1
Cell surface protein.
 
   
 0.678
AKB66237.1
Hypothetical protein.
 
     0.639
AKB65153.1
Alcohol dehydrogenase.
 
    0.502
AKB66050.1
Pyruvate carboxyl transferase subunit B.
     
 0.482
AKB65874.1
Hypothetical protein.
      
 0.467
AKB66290.1
Hypothetical protein.
      
 0.467
AKB65508.1
Substrate-specific component TrpP of tryptophan ECF transporter.
 
    0.426
Your Current Organism:
Methanosarcina mazei
NCBI taxonomy Id: 213585
Other names: M. mazei S-6, Methanosarcina mazei S-6
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