STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKB64612.1Rubredoxin. (181 aa)    
Predicted Functional Partners:
AKB64611.1
Glutaredoxin family protein.
 
  
 0.953
AKB63533.1
Glutamine amidotransferase, class-II.
  
  
  0.640
AKB63532.1
Glutamate synthase [NADPH] large chain; Belongs to the glutamate synthase family.
     
 0.625
AKB63845.1
Glutamate synthase [NADPH] small chain.
    
  0.576
AKB64845.1
Hypothetical protein.
 
  
 0.571
AKB63535.1
Glutamine synthetase type I.
  
  
 0.538
AKB64698.1
Glutamine synthetase type I.
  
  
 0.534
AKB65898.1
Formylmethanofuran dehydrogenase subunit C.
     
 0.482
AKB66297.1
Formylmethanofuran dehydrogenase (molybdenum) subunit C.
     
 0.482
AKB65652.1
Putative thiol:disulfide oxidoreductase involved in cytochrome C-type biogenesis.
 
 
 
 0.458
Your Current Organism:
Methanosarcina mazei
NCBI taxonomy Id: 213585
Other names: M. mazei S-6, Methanosarcina mazei S-6
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