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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKB64617.1Mobile element protein. (396 aa)    
Predicted Functional Partners:
AKB64494.1
Hypothetical protein.
  
     0.579
rpoP
DNA-directed RNA polymerase subunit P; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal RpoP/eukaryotic RPC10 RNA polymerase subunit family.
  
     0.579
AKB63526.1
Hypothetical protein.
  
     0.557
AKB64788.1
Transcriptional regulator.
  
     0.548
AKB63565.1
Hypothetical protein.
  
     0.501
AKB66376.1
Acetyltransferase (GNAT) family protein.
  
     0.488
AKB65454.1
Transcriptional regulator, ArsR family.
  
     0.456
AKB65459.1
Hypothetical protein.
  
     0.443
AKB64493.1
Hypothetical protein.
  
     0.424
AKB64492.1
Hypothetical protein.
  
     0.423
Your Current Organism:
Methanosarcina mazei
NCBI taxonomy Id: 213585
Other names: M. mazei S-6, Methanosarcina mazei S-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.