STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKB64642.1Putative membrane protein. (188 aa)    
Predicted Functional Partners:
AKB64761.1
Transcriptional regulator, MarR family.
 
     0.514
AKB65445.1
Hypothetical protein; Similar to cytochrome C-type biogenesis protein CcdA.
 
     0.488
AKB66312.1
Hypothetical protein.
  
     0.472
AKB63675.1
Hypothetical protein.
 
     0.471
AKB64987.1
Cell surface protein.
  
     0.470
AKB66485.1
Alpha/beta superfamily.
 
     0.441
AKB64643.1
Transposase.
       0.438
AKB66078.1
Hypothetical protein.
  
     0.436
mfnA
L-tyrosine decarboxylase; Catalyzes the decarboxylation of L-tyrosine to produce tyramine for methanofuran biosynthesis. Can also catalyze the decarboxylation of L-aspartate to produce beta-alanine for coenzyme A (CoA) biosynthesis; Belongs to the group II decarboxylase family. MfnA subfamily.
  
  
 0.424
AKB65449.1
Hypothetical protein.
 
   
 0.418
Your Current Organism:
Methanosarcina mazei
NCBI taxonomy Id: 213585
Other names: M. mazei S-6, Methanosarcina mazei S-6
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