STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKB64657.1ABC transporter, ATP-binding protein. (236 aa)    
Predicted Functional Partners:
AKB64656.1
ABC transporter, permease protein.
 
 
 0.966
AKB65058.1
ABC transporter, ATP-binding protein.
 
    
0.903
AKB63546.1
ABC transporter, permease protein.
 
 
 0.873
AKB64743.1
Multidrug ABC transporter, permease protein.
 
 
 0.866
AKB65883.1
ABC transporter, permease protein.
 
 
 0.862
AKB65442.1
ABC transporter, permease protein.
 
 
 0.860
AKB65451.1
Hypothetical protein.
  
 0.734
AKB65332.1
ABC transporter, ATP-binding protein.
    
 0.669
AKB64655.1
3-oxoacyl-[acyl-carrier protein] reductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
 
 0.609
AKB64658.1
Hypothetical protein.
       0.553
Your Current Organism:
Methanosarcina mazei
NCBI taxonomy Id: 213585
Other names: M. mazei S-6, Methanosarcina mazei S-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.