STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKB64676.1Transcriptional regulator, ArsR family. (137 aa)    
Predicted Functional Partners:
AKB65815.1
Iron(III) dicitrate transport ATP-binding protein.
 
  
 0.799
AKB65813.1
Iron(III) dicitrate-binding protein.
  
  
 0.763
AKB65814.1
Iron(III) dicitrate transport system permease protein.
 
  
 0.714
AKB64675.1
Hypothetical protein.
     
 0.649
AKB65542.1
Thioredoxin reductase.
  
  
 0.646
AKB64479.1
Putative ankyrin repeat protein.
  
  
 0.630
AKB64741.1
Cob(I)alamin adenosyltransferase.
    
 0.630
AKB65646.1
Arsenical resistance operon repressor.
 
   
 0.594
AKB64004.1
Putative voltage-gated ClC-type chloride channel ClcB.
     
 0.560
AKB63845.1
Glutamate synthase [NADPH] small chain.
     
 0.558
Your Current Organism:
Methanosarcina mazei
NCBI taxonomy Id: 213585
Other names: M. mazei S-6, Methanosarcina mazei S-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.