STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKB64691.1Transcriptional regulator, MarR family. (155 aa)    
Predicted Functional Partners:
AKB64692.1
Multi antimicrobial extrusion protein (Na(+)/drug antiporter), MATE family of MDR efflux pumps.
 
  
 0.762
AKB64606.1
Hypothetical protein.
 
 
 0.445
AKB64572.1
Ferredoxin.
 
 
 0.431
AKB64693.1
Putative membrane associated protein.
       0.412
AKB64198.1
L-proline glycine betaine binding ABC transporter protein ProX; TCDB 3.A.1.12.1; Osmotic adaptation.
 
  
 0.400
Your Current Organism:
Methanosarcina mazei
NCBI taxonomy Id: 213585
Other names: M. mazei S-6, Methanosarcina mazei S-6
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.