STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Coexpression
Experiments
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[Homology]
Score
AKB64706.1Transcriptional regulator, Hth-3 family. (184 aa)    
Predicted Functional Partners:
AKB64705.1
Acyl-coenzyme A synthetase/AMP-(fatty) acid ligase.
 
 0.986
AKB64702.1
Ketoisovalerate oxidoreductase subunit VorA.
 
  
 0.787
AKB64704.1
Ketoisovalerate oxidoreductase subunit VorC.
 
  
 0.733
AKB64703.1
Ketoisovalerate oxidoreductase subunit VorB.
 
  
 0.726
AKB65503.1
Long-chain-fatty-acid--CoA ligase.
 
  
 0.599
AKB63879.1
Nicotinamide-nucleotide adenylyltransferase, NadM family.
  
 
 0.545
ndk
Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate.
    
 0.523
aroA-2
5-Enolpyruvylshikimate-3-phosphate synthase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate.
    
 0.510
argB
Acetylglutamate kinase; Catalyzes the ATP-dependent phosphorylation of N-acetyl-L- glutamate; Belongs to the acetylglutamate kinase family. ArgB subfamily.
    
 0.508
AKB66442.1
Aspartokinase; Belongs to the aspartokinase family.
  
 
 0.506
Your Current Organism:
Methanosarcina mazei
NCBI taxonomy Id: 213585
Other names: M. mazei S-6, Methanosarcina mazei S-6
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