STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKB64739.1Flavodoxin. (176 aa)    
Predicted Functional Partners:
AKB65873.1
ChlD component of cobalt chelatase involved in B12 biosynthesis.
     
  0.957
AKB66135.1
Siroheme synthase; Precorrin-2 oxidase; Sirohydrochlorin ferrochelatase.
     
  0.593
AKB64890.1
Hypothetical protein.
     
  0.586
queE
Queuosine Biosynthesis QueE Radical SAM; Catalyzes the complex heterocyclic radical-mediated conversion of 6-carboxy-5,6,7,8-tetrahydropterin (CPH4) to 7-carboxy-7- deazaguanine (CDG), a step common to the biosynthetic pathways of all 7-deazapurine-containing compounds.
     
  0.562
AKB65347.1
Aromatic hydrocarbon catabolism protein.
 
  
  0.446
AKB63974.1
Acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase.
 
  
  0.445
AKB65933.1
Radical SAM domain protein.
 
  
  0.438
AKB65251.1
Putative hydrolase.
 
  
  0.410
AKB63224.1
Fe-S OXIDOREDUCTASE.
     
  0.402
AKB65212.1
BchE/P-methylase family protein.
     
  0.402
Your Current Organism:
Methanosarcina mazei
NCBI taxonomy Id: 213585
Other names: M. mazei S-6, Methanosarcina mazei S-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.