Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKB64756.1Putative hydrolase. (264 aa)    
Predicted Functional Partners:
AKB63764.1
Hypothetical protein.
 
 
 0.689
AKB64424.1
Serine/threonine protein phosphatase BSU1.
   
 0.600
AKB66208.1
2',3'-cyclic nucleotide 3'-phosphodiesterase.
   
 0.600
AKB65973.1
Isochorismatase.
 
 0.552
AKB64479.1
Putative ankyrin repeat protein.
  
 0.549
AKB63526.1
Hypothetical protein.
  
     0.545
AKB64825.1
Hypothetical protein.
  
     0.542
AKB64755.1
Hypothetical protein.
     
 0.540
AKB64990.1
Acetyltransferase, GNAT family.
 
 
 0.528
AKB63214.1
Hypothetical protein.
  
 
 0.493
Your Current Organism:
Methanosarcina mazei
NCBI taxonomy Id: 213585
Other names: M. mazei S-6, Methanosarcina mazei S-6
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