Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKB64758.1Hypothetical protein. (127 aa)    
Predicted Functional Partners:
AKB65210.1
Phytoene dehydrogenase.
 
     0.602
AKB64033.1
S-layer family duplication domain protein.
  
     0.571
AKB66376.1
Acetyltransferase (GNAT) family protein.
 
     0.561
AKB66391.1
Putative nucleotidyltransferase.
 
     0.502
AKB65678.1
Hypothetical protein.
  
     0.483
AKB64227.1
Hypothetical protein.
  
     0.463
AKB63389.1
Thymidylate synthase.
  
     0.456
AKB65144.1
Putative phosphoglycerate mutase.
 
     0.455
AKB65422.1
Hypothetical protein; Possibly the antitoxin component of a toxin-antitoxin (TA) module.
     
 0.448
AKB64546.1
Phytoene dehydrogenase.
 
     0.444
Your Current Organism:
Methanosarcina mazei
NCBI taxonomy Id: 213585
Other names: M. mazei S-6, Methanosarcina mazei S-6
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