STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKB64762.1Hypothetical protein. (185 aa)    
Predicted Functional Partners:
AKB65876.1
PQQ enzyme repeat domain protein.
 
 0.926
AKB65428.1
WD-domain containing protein.
 
 0.906
AKB64479.1
Putative ankyrin repeat protein.
 
 
 0.829
AKB63820.1
NMD protein affecting ribosome stability and mRNA decay.
  
 
 0.794
rpl40e
LSU ribosomal protein L40e; Belongs to the eukaryotic ribosomal protein eL40 family.
   
 0.773
rpl18a
LSU ribosomal protein L18Ae.
  
 
 0.708
AKB64721.1
Hypothetical protein.
   
 0.708
AKB64754.1
Hypothetical protein.
   
 0.708
AKB65531.1
GTPase Era.
   
 0.708
eif6
Eukaryotic translation initiation factor 6; Binds to the 50S ribosomal subunit and prevents its association with the 30S ribosomal subunit to form the 70S initiation complex.
   
 
 0.702
Your Current Organism:
Methanosarcina mazei
NCBI taxonomy Id: 213585
Other names: M. mazei S-6, Methanosarcina mazei S-6
Server load: low (32%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.