Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKB64767.1Hypothetical protein. (413 aa)    
Predicted Functional Partners:
AKB64414.1
Hypothetical protein.
  
     0.633
AKB64975.1
Hypothetical protein.
  
     0.629
AKB65049.1
Hypothetical protein.
  
     0.628
AKB65225.1
Hypothetical protein.
  
     0.625
AKB65876.1
PQQ enzyme repeat domain protein.
  
     0.625
AKB66020.1
Hypothetical protein.
  
     0.619
AKB65877.1
PQQ enzyme repeat domain protein.
  
     0.615
AKB65048.1
Hypothetical protein.
  
     0.609
AKB65223.1
Hypothetical protein.
  
     0.603
AKB64637.1
Hypothetical protein.
  
     0.601
Your Current Organism:
Methanosarcina mazei
NCBI taxonomy Id: 213585
Other names: M. mazei S-6, Methanosarcina mazei S-6
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