Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKB64783.1Hypothetical protein. (467 aa)    
Predicted Functional Partners:
AKB64784.1
ABC transporter, ATP-binding protein.
 
    0.844
AKB64782.1
Cell division protein FtsX.
 
    0.788
AKB63354.1
Hypothetical protein.
  
     0.639
AKB64967.1
Hypothetical protein.
  
     0.631
AKB66237.1
Hypothetical protein.
  
     0.570
AKB65210.1
Phytoene dehydrogenase.
 
     0.564
AKB64546.1
Phytoene dehydrogenase.
 
     0.558
AKB66370.1
Putative transcriptional regulators.
 
     0.553
AKB64033.1
S-layer family duplication domain protein.
  
     0.549
AKB64124.1
Hypothetical protein.
  
     0.543
Your Current Organism:
Methanosarcina mazei
NCBI taxonomy Id: 213585
Other names: M. mazei S-6, Methanosarcina mazei S-6
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