Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKB64784.1ABC transporter, ATP-binding protein. (306 aa)    
Predicted Functional Partners:
AKB64782.1
Cell division protein FtsX.
 0.993
AKB64864.1
ABC transporter, permease protein.
 0.959
AKB66233.1
ABC transporter, permease protein.
 0.950
AKB63549.1
ABC transporter, permease protein.
 0.941
AKB63553.1
ABC transporter, permease protein.
 0.933
AKB65020.1
ABC transporter, permease protein.
 0.923
AKB66256.1
ABC transporter, permease protein.
 
 0.877
AKB64783.1
Hypothetical protein.
 
    0.844
AKB64514.1
Dipeptide transport ATP-binding protein DppF; TCDB 3.A.1.5.2.
 
    
0.651
AKB65235.1
ABC transporter, permease protein.
  
 0.630
Your Current Organism:
Methanosarcina mazei
NCBI taxonomy Id: 213585
Other names: M. mazei S-6, Methanosarcina mazei S-6
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