AKB64795.1 protein (Methanosarcina mazei) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

AKB64795.1

Methionine gamma-lyase. (394 aa)

Predicted Functional Partners:

AKB64039.1

0.978

AKB66504.1

0.978

AKB66505.1

0.978

AKB64061.1

0.956

metG

0.938

AKB65542.1

0.931

AKB64250.1

0.903

AKB65805.1

0.901

mat

0.901

AKB65118.1

0.898

Your Current Organism:

Methanosarcina mazei

NCBI taxonomy Id: 213585
Other names: M. mazei S-6, Methanosarcina mazei S-6

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AKB64039.1	AKB64061.1	MSMAS_0843	MSMAS_0865	5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase.	5,10-methylenetetrahydrofolate reductase.	0.878
AKB64039.1	AKB64795.1	MSMAS_0843	MSMAS_1599	5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase.	Methionine gamma-lyase.	0.978
AKB64039.1	AKB65118.1	MSMAS_0843	MSMAS_1922	5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase.	Asparagine synthetase (glutamine-hydrolyzing).	0.588
AKB64039.1	AKB65805.1	MSMAS_0843	MSMAS_2609	5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase.	Archaeal S-adenosylmethionine synthetase.	0.957
AKB64039.1	AKB66504.1	MSMAS_0843	MSMAS_3308	5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase.	5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase.	0.901
AKB64039.1	AKB66505.1	MSMAS_0843	MSMAS_3309	5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase.	5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase.	0.900
AKB64039.1	mat	MSMAS_0843	MSMAS_3166	5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase.	Archaeal S-adenosylmethionine synthetase; Catalyzes the formation of S-adenosylmethionine from methionine and ATP; Belongs to the AdoMet synthase 2 family.	0.957
AKB64039.1	metG	MSMAS_0843	MSMAS_0438	5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase.	Methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.	0.909
AKB64061.1	AKB64039.1	MSMAS_0865	MSMAS_0843	5,10-methylenetetrahydrofolate reductase.	5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase.	0.878
AKB64061.1	AKB64795.1	MSMAS_0865	MSMAS_1599	5,10-methylenetetrahydrofolate reductase.	Methionine gamma-lyase.	0.956
AKB64061.1	AKB66504.1	MSMAS_0865	MSMAS_3308	5,10-methylenetetrahydrofolate reductase.	5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase.	0.878
AKB64061.1	AKB66505.1	MSMAS_0865	MSMAS_3309	5,10-methylenetetrahydrofolate reductase.	5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase.	0.878
AKB64250.1	AKB64795.1	MSMAS_1054	MSMAS_1599	Putative Cro-like protein.	Methionine gamma-lyase.	0.903
AKB64795.1	AKB64039.1	MSMAS_1599	MSMAS_0843	Methionine gamma-lyase.	5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase.	0.978
AKB64795.1	AKB64061.1	MSMAS_1599	MSMAS_0865	Methionine gamma-lyase.	5,10-methylenetetrahydrofolate reductase.	0.956
AKB64795.1	AKB64250.1	MSMAS_1599	MSMAS_1054	Methionine gamma-lyase.	Putative Cro-like protein.	0.903
AKB64795.1	AKB65118.1	MSMAS_1599	MSMAS_1922	Methionine gamma-lyase.	Asparagine synthetase (glutamine-hydrolyzing).	0.898
AKB64795.1	AKB65542.1	MSMAS_1599	MSMAS_2346	Methionine gamma-lyase.	Thioredoxin reductase.	0.931
AKB64795.1	AKB65805.1	MSMAS_1599	MSMAS_2609	Methionine gamma-lyase.	Archaeal S-adenosylmethionine synthetase.	0.901
AKB64795.1	AKB66504.1	MSMAS_1599	MSMAS_3308	Methionine gamma-lyase.	5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase.	0.978