STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKB64797.1TPR domain protein, putative component of TonB system. (441 aa)    
Predicted Functional Partners:
AKB64480.1
GTP cyclohydrolase III (methanopterin).
  
     0.686
AKB65122.1
Hypothetical protein.
 
     0.669
AKB64479.1
Putative ankyrin repeat protein.
 
 0.667
AKB65428.1
WD-domain containing protein.
 
 0.660
ndk
Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate.
  
 0.628
AKB65475.1
Chaperone protein.
  
 0.627
AKB63796.1
Hypothetical protein.
 
     0.626
AKB64768.1
GTP cyclohydrolase III (methanopterin).
  
     0.624
AKB64798.1
Hypothetical protein.
       0.613
AKB66477.1
Chaperone protein.
 
 
 0.608
Your Current Organism:
Methanosarcina mazei
NCBI taxonomy Id: 213585
Other names: M. mazei S-6, Methanosarcina mazei S-6
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