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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKB64804.1Hypothetical protein. (664 aa)    
Predicted Functional Partners:
AKB65510.1
Hypothetical protein.
 
     0.717
tfe
Archaeal transcription factor E; Transcription factor that plays a role in the activation of archaeal genes transcribed by RNA polymerase. Facilitates transcription initiation by enhancing TATA-box recognition by TATA-box-binding protein (Tbp), and transcription factor B (Tfb) and RNA polymerase recruitment. Not absolutely required for transcription in vitro, but particularly important in cases where Tbp or Tfb function is not optimal. It dynamically alters the nucleic acid-binding properties of RNA polymerases by stabilizing the initiation complex and destabilizing elongation complexe [...]
  
   
 0.700
AKB64051.1
Hypothetical protein.
  
     0.693
AKB65530.1
Hypothetical protein.
  
     0.680
AKB63917.1
Hypothetical protein.
  
     0.669
AKB66458.1
Archaeosortase A.
 
     0.669
AKB63252.1
Archaeal heat shock regulator, ArsR family.
  
     0.659
AKB63858.1
Oligosaccharyl transferase.
  
     0.649
AKB63859.1
Oligosaccharyl transferase.
  
     0.648
AKB63250.1
Zn-ribbon containing protein.
  
     0.641
Your Current Organism:
Methanosarcina mazei
NCBI taxonomy Id: 213585
Other names: M. mazei S-6, Methanosarcina mazei S-6
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