STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKB64809.1Hypothetical protein. (156 aa)    
Predicted Functional Partners:
AKB65409.1
NADH-quinone oxidoreductase subunit C/D.
 
  
  0.752
AKB64810.1
Ribosome biogenesis protein TSR3; Probable pre-rRNA processing protein involved in ribosome biogenesis; Belongs to the TSR3 family.
       0.719
AKB65410.1
NADH-quinone oxidoreductase subunit C/D.
    
  0.716
AKB65417.1
NADH:ubiquinone oxidoreductase subunit M.
  
 
  0.714
AKB65407.1
Hypothetical protein.
    
  0.660
AKB65113.1
Hypothetical protein.
     0.649
fpoH
FPO subunit H; FPO shuttles electrons from F(420)H(2), via FAD and iron- sulfur (Fe-S) centers, to quinones in the F(420)H(2):heterodisulfide oxidoreduction chain. The immediate electron acceptor for the enzyme in this species is believed to be methanophenazine. Couples the redox reaction to proton translocation (for every two electrons transferred, 0.9 hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient.
    
  0.649
AKB65415.1
NADH:ubiquinone oxidoreductase subunit K.
  
 
  0.645
AKB65408.1
Putative membrane-bound hydrogenase subunit mbhJ; Belongs to the complex I 20 kDa subunit family.
    
  0.607
AKB65418.1
NADH:ubiquinone oxidoreductase subunit N.
    
  0.607
Your Current Organism:
Methanosarcina mazei
NCBI taxonomy Id: 213585
Other names: M. mazei S-6, Methanosarcina mazei S-6
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