STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKB64809.1Hypothetical protein. (156 aa)    
Predicted Functional Partners:
AKB64810.1
Ribosome biogenesis protein TSR3; Probable pre-rRNA processing protein involved in ribosome biogenesis; Belongs to the TSR3 family.
       0.882
AKB65409.1
NADH-quinone oxidoreductase subunit C/D.
 
  
  0.816
AKB65410.1
NADH-quinone oxidoreductase subunit C/D.
    
  0.789
AKB65113.1
Hypothetical protein.
     0.648
fpoH
FPO subunit H; FPO shuttles electrons from F(420)H(2), via FAD and iron- sulfur (Fe-S) centers, to quinones in the F(420)H(2):heterodisulfide oxidoreduction chain. The immediate electron acceptor for the enzyme in this species is believed to be methanophenazine. Couples the redox reaction to proton translocation (for every two electrons transferred, 0.9 hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient.
    
 0.637
AKB65417.1
NADH:ubiquinone oxidoreductase subunit M.
  
 
  0.608
AKB65407.1
Hypothetical protein.
    
  0.590
AKB65415.1
NADH:ubiquinone oxidoreductase subunit K.
    
  0.572
AKB65408.1
Putative membrane-bound hydrogenase subunit mbhJ; Belongs to the complex I 20 kDa subunit family.
    
  0.559
AKB65418.1
NADH:ubiquinone oxidoreductase subunit N.
    
  0.559
Your Current Organism:
Methanosarcina mazei
NCBI taxonomy Id: 213585
Other names: M. mazei S-6, Methanosarcina mazei S-6
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