Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKB64835.1Glycosyltransferase. (95 aa)    
Predicted Functional Partners:
AKB64834.1
Glycosyltransferase.
     0.950
AKB64833.1
Hypothetical protein.
       0.943
AKB64832.1
Sorbitol dehydrogenase.
 
     0.808
AKB63322.1
Dolichol-phosphate mannosyltransferase.
       0.670
AKB63334.1
Glycosyltransferase (family 2).
       0.670
AKB64831.1
CapK protein, putative.
 
     0.603
AKB65776.1
Hypothetical protein.
 
     0.541
AKB65182.1
Hypothetical protein.
  
     0.524
AKB63526.1
Hypothetical protein.
  
     0.508
AKB63371.1
Hypothetical protein.
 
     0.454
Your Current Organism:
Methanosarcina mazei
NCBI taxonomy Id: 213585
Other names: M. mazei S-6, Methanosarcina mazei S-6
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