STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKB64846.1Glycogen debranching enzyme. (727 aa)    
Predicted Functional Partners:
AKB64769.1
Glycogen phosphorylase.
  
 0.812
AKB64962.1
Mannose-6-phosphate isomerase, bifunctional enzyme.
 
 0.738
AKB64845.1
Hypothetical protein.
       0.597
AKB65662.1
Glucoamylase.
 
  
 0.576
AKB63637.1
Glucoamylase.
 
  
 0.559
AKB63857.1
Glycosyltransferase.
 
 0.543
AKB65774.1
Glycosyltransferase.
 
 0.540
AKB63856.1
Glycosyl transferase, group 1.
 
 0.524
AKB63918.1
Hypothetical protein.
 
 0.510
AKB65185.1
UPF0135 protein Bsu YqfO.
 
 
   0.510
Your Current Organism:
Methanosarcina mazei
NCBI taxonomy Id: 213585
Other names: M. mazei S-6, Methanosarcina mazei S-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.