Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKB64856.1ABC transporter, ATP-binding protein. (236 aa)    
Predicted Functional Partners:
AKB64782.1
Cell division protein FtsX.
 0.967
AKB63553.1
ABC transporter, permease protein.
 0.961
AKB64864.1
ABC transporter, permease protein.
 0.954
AKB66233.1
ABC transporter, permease protein.
 0.945
AKB63549.1
ABC transporter, permease protein.
 0.935
AKB65020.1
ABC transporter, permease protein.
 0.911
AKB66256.1
ABC transporter, permease protein.
 
 0.844
AKB64857.1
Cell surface glycoprotein.
       0.779
AKB64858.1
Cell surface protein.
       0.779
AKB66024.1
Oligopeptide transport system permease protein OppB; TCDB 3.A.1.5.1.
  
0.715
Your Current Organism:
Methanosarcina mazei
NCBI taxonomy Id: 213585
Other names: M. mazei S-6, Methanosarcina mazei S-6
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