Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKB64894.1Hypothetical protein. (75 aa)    
Predicted Functional Partners:
AKB64895.1
PPOX class probable F420-dependent enzyme.
  
  
 0.559
AKB66404.1
Hypothetical protein.
  
  
 0.530
AKB64849.1
Lactoylglutathione lyase and related lyase.
  
  
 0.465
AKB66463.1
Lactoylglutation lyase.
  
  
 0.465
AKB63546.1
ABC transporter, permease protein.
  
  
 0.460
AKB64656.1
ABC transporter, permease protein.
  
  
 0.460
AKB64743.1
Multidrug ABC transporter, permease protein.
  
  
 0.460
AKB65442.1
ABC transporter, permease protein.
  
  
 0.460
AKB65883.1
ABC transporter, permease protein.
  
  
 0.460
AKB63891.1
Long-chain-fatty-acid--CoA ligase.
   
 
 0.448
Your Current Organism:
Methanosarcina mazei
NCBI taxonomy Id: 213585
Other names: M. mazei S-6, Methanosarcina mazei S-6
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