AKB64896.1 protein (Methanosarcina mazei) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

AKB64896.1

Type I restriction-modification system, DNA-methyltransferase subunit M. (714 aa)

Predicted Functional Partners:

AKB64900.1

0.952

AKB64901.1

0.947

AKB63745.1

0.946

AKB63746.1

0.941

AKB65693.1

0.794

AKB64068.1

0.776

AKB65173.1

0.776

AKB65691.1

0.776

AKB65200.1

0.773

AKB64737.1

0.771

Your Current Organism:

Methanosarcina mazei

NCBI taxonomy Id: 213585
Other names: M. mazei S-6, Methanosarcina mazei S-6

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AKB63745.1	AKB63746.1	MSMAS_0549	MSMAS_0550	Type I restriction-modification system, restriction subunit R.	Type I restriction-modification system, specificity subunit S.	0.940
AKB63745.1	AKB64737.1	MSMAS_0549	MSMAS_1541	Type I restriction-modification system, restriction subunit R.	Type I restriction-modification system, specificity subunit S.	0.517
AKB63745.1	AKB64896.1	MSMAS_0549	MSMAS_1700	Type I restriction-modification system, restriction subunit R.	Type I restriction-modification system, DNA-methyltransferase subunit M.	0.946
AKB63745.1	AKB64900.1	MSMAS_0549	MSMAS_1704	Type I restriction-modification system, restriction subunit R.	Type I restriction-modification system, specificity subunit S.	0.877
AKB63745.1	AKB65200.1	MSMAS_0549	MSMAS_2004	Type I restriction-modification system, restriction subunit R.	Type I restriction-modification system, specificity subunit S.	0.517
AKB63745.1	AKB65693.1	MSMAS_0549	MSMAS_2497	Type I restriction-modification system, restriction subunit R.	Type I restriction-modification system, specificity subunit S.	0.613
AKB63746.1	AKB63745.1	MSMAS_0550	MSMAS_0549	Type I restriction-modification system, specificity subunit S.	Type I restriction-modification system, restriction subunit R.	0.940
AKB63746.1	AKB64068.1	MSMAS_0550	MSMAS_0872	Type I restriction-modification system, specificity subunit S.	Type I restriction-modification system, restriction subunit R.	0.519
AKB63746.1	AKB64896.1	MSMAS_0550	MSMAS_1700	Type I restriction-modification system, specificity subunit S.	Type I restriction-modification system, DNA-methyltransferase subunit M.	0.941
AKB63746.1	AKB64901.1	MSMAS_0550	MSMAS_1705	Type I restriction-modification system, specificity subunit S.	Type I restriction-modification system, restriction subunit R.	0.876
AKB63746.1	AKB65173.1	MSMAS_0550	MSMAS_1977	Type I restriction-modification system, specificity subunit S.	Type I restriction-modification system, restriction subunit R.	0.519
AKB63746.1	AKB65691.1	MSMAS_0550	MSMAS_2495	Type I restriction-modification system, specificity subunit S.	Type I restriction-modification system, restriction subunit R.	0.519
AKB64068.1	AKB63746.1	MSMAS_0872	MSMAS_0550	Type I restriction-modification system, restriction subunit R.	Type I restriction-modification system, specificity subunit S.	0.519
AKB64068.1	AKB64737.1	MSMAS_0872	MSMAS_1541	Type I restriction-modification system, restriction subunit R.	Type I restriction-modification system, specificity subunit S.	0.609
AKB64068.1	AKB64896.1	MSMAS_0872	MSMAS_1700	Type I restriction-modification system, restriction subunit R.	Type I restriction-modification system, DNA-methyltransferase subunit M.	0.776
AKB64068.1	AKB64900.1	MSMAS_0872	MSMAS_1704	Type I restriction-modification system, restriction subunit R.	Type I restriction-modification system, specificity subunit S.	0.519
AKB64068.1	AKB65200.1	MSMAS_0872	MSMAS_2004	Type I restriction-modification system, restriction subunit R.	Type I restriction-modification system, specificity subunit S.	0.517
AKB64068.1	AKB65693.1	MSMAS_0872	MSMAS_2497	Type I restriction-modification system, restriction subunit R.	Type I restriction-modification system, specificity subunit S.	0.589
AKB64737.1	AKB63745.1	MSMAS_1541	MSMAS_0549	Type I restriction-modification system, specificity subunit S.	Type I restriction-modification system, restriction subunit R.	0.517
AKB64737.1	AKB64068.1	MSMAS_1541	MSMAS_0872	Type I restriction-modification system, specificity subunit S.	Type I restriction-modification system, restriction subunit R.	0.609