Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
AKB64896.1Type I restriction-modification system, DNA-methyltransferase subunit M. (714 aa)    
Predicted Functional Partners:
AKB64900.1
Type I restriction-modification system, specificity subunit S.
 
 0.929
AKB63746.1
Type I restriction-modification system, specificity subunit S.
 
 0.914
AKB64901.1
Type I restriction-modification system, restriction subunit R.
 
  
 0.878
AKB63745.1
Type I restriction-modification system, restriction subunit R.
 
  
 0.877
AKB65693.1
Type I restriction-modification system, specificity subunit S.
 
 
 0.697
AKB65200.1
Type I restriction-modification system, specificity subunit S.
 
 
 0.664
AKB64737.1
Type I restriction-modification system, specificity subunit S.
 
 
 0.661
AKB66199.1
Type I restriction-modification system, specificity subunit S.
  
 
 0.624
AKB63749.1
EcoKI restriction-modification system protein HsdS.
  
 
 0.610
AKB64069.1
Type I restriction-modification system, specificity subunit S.
  
 
 0.610
Your Current Organism:
Methanosarcina mazei
NCBI taxonomy Id: 213585
Other names: M. mazei S-6, Methanosarcina mazei S-6
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