STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKB65041.1L-sorbosone dehydrogenase. (381 aa)    
Predicted Functional Partners:
AKB65040.1
Hypothetical protein.
       0.722
AKB64849.1
Lactoylglutathione lyase and related lyase.
  
 
  0.612
AKB66463.1
Lactoylglutation lyase.
  
 
  0.612
AKB63225.1
Metallo-beta-lactamase.
  
 
  0.599
AKB64392.1
Metallo-beta-lactamase.
  
 
  0.599
AKB65039.1
Hypothetical protein.
       0.534
AKB65042.1
Ferritin-like di-iron-carboxylate protein.
       0.530
AKB65495.1
Phospholipid-binding protein.
      0.530
AKB66316.1
Sugar phosphate isomerase/epimerase.
 
 
 0.440
AKB64310.1
3-oxoacyl-[acyl-carrier protein] reductase.
    
 0.417
Your Current Organism:
Methanosarcina mazei
NCBI taxonomy Id: 213585
Other names: M. mazei S-6, Methanosarcina mazei S-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.