STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKB65054.1Hypothetical protein. (79 aa)    
Predicted Functional Partners:
AKB63873.1
Superoxide reductase.
  
    0.838
AKB65053.1
Transcriptional regulator, ArsR family.
 
     0.815
AKB64892.1
Transcriptional regulator, ArsR family.
 
     0.649
AKB64385.1
Carboxymuconolactone decarboxylase family protein.
 
    0.565
AKB64586.1
Rubredoxin; Belongs to the rubredoxin family.
  
    0.551
AKB63583.1
Alkylhydroperoxidase AhpD family core domain protein.
 
    0.503
AKB65055.1
Putative methanogenesis marker protein 8.
 
     0.501
AKB66444.1
Hypothetical protein.
  
     0.497
AKB63687.1
Alkyl hydroperoxide reductase subunit C-like protein; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides.
  
    0.441
AKB63655.1
Putative carboxymuconolactone decarboxylase family protein.
 
    0.420
Your Current Organism:
Methanosarcina mazei
NCBI taxonomy Id: 213585
Other names: M. mazei S-6, Methanosarcina mazei S-6
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