Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKB65062.1Protein export membrane protein. (786 aa)    
Predicted Functional Partners:
AKB66313.1
Hypothetical protein.
 
  
 0.748
AKB66312.1
Hypothetical protein.
 
  
 0.727
AKB65063.1
Transcriptional regulator, MarR family.
       0.477
AKB63806.1
Putative permease.
 
     0.436
AKB64228.1
Hypothetical protein.
  
   
 0.416
AKB65538.1
Hypothetical protein; Belongs to the UPF0212 family.
  
     0.414
AKB66241.1
Biotin synthase-related enzyme.
  
     0.407
secE
Preprotein translocase subunit SecE; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation.
  
     0.403
AKB63647.1
AAA family ATPase; Belongs to the AAA ATPase family.
 
    0.402
Your Current Organism:
Methanosarcina mazei
NCBI taxonomy Id: 213585
Other names: M. mazei S-6, Methanosarcina mazei S-6
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