STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKB65096.1Glycogen debranching enzyme. (631 aa)    
Predicted Functional Partners:
AKB64769.1
Glycogen phosphorylase.
  
 0.812
AKB64962.1
Mannose-6-phosphate isomerase, bifunctional enzyme.
 
 0.736
AKB65662.1
Glucoamylase.
 
  
 0.555
AKB65774.1
Glycosyltransferase.
 
 0.541
AKB63637.1
Glucoamylase.
 
  
 0.538
AKB63857.1
Glycosyltransferase.
 
 0.530
AKB63856.1
Glycosyl transferase, group 1.
 
 0.514
AKB64342.1
Malto-oligosyltrehalose trehalohydrolase.
 
  
 0.510
AKB65185.1
UPF0135 protein Bsu YqfO.
 
 
   0.510
AKB63325.1
Glycosyl transferase, group 1.
  
 0.443
Your Current Organism:
Methanosarcina mazei
NCBI taxonomy Id: 213585
Other names: M. mazei S-6, Methanosarcina mazei S-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.