AKB65134.1 protein (Methanosarcina mazei) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

AKB65134.1

OB-fold nucleic acid binding domain protein. (346 aa)

Predicted Functional Partners:

AKB65135.1

0.904

trpS

0.862

AKB63861.1

0.814

AKB66241.1

0.805

AKB63589.1

0.749

AKB63588.1

0.747

AKB63584.1

0.743

AKB63267.1

0.742

AKB63268.1

0.737

AKB63269.1

0.736

Your Current Organism:

Methanosarcina mazei

NCBI taxonomy Id: 213585
Other names: M. mazei S-6, Methanosarcina mazei S-6

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AKB63267.1	AKB63268.1	MSMAS_0071	MSMAS_0072	Methyl coenzyme M reductase operon protein C.	Methyl coenzyme M reductase gamma subunit.	0.999
AKB63267.1	AKB63269.1	MSMAS_0071	MSMAS_0073	Methyl coenzyme M reductase operon protein C.	Methyl coenzyme M reductase alpha subunit; Component of the methyl-coenzyme M reductase (MCR) I that catalyzes the reductive cleavage of methyl-coenzyme M (CoM-S-CH3 or 2- (methylthio)ethanesulfonate) using coenzyme B (CoB or 7- mercaptoheptanoylthreonine phosphate) as reductant which results in the production of methane and the mixed heterodisulfide of CoB and CoM (CoM-S-S-CoB). This is the final step in methanogenesis.	0.999
AKB63267.1	AKB63584.1	MSMAS_0071	MSMAS_0388	Methyl coenzyme M reductase operon protein C.	Putative methanogenesis marker protein 7.	0.968
AKB63267.1	AKB63588.1	MSMAS_0071	MSMAS_0392	Methyl coenzyme M reductase operon protein C.	Putative methanogenesis marker protein 6.	0.826
AKB63267.1	AKB63589.1	MSMAS_0071	MSMAS_0393	Methyl coenzyme M reductase operon protein C.	Putative methanogenesis marker protein 3; Belongs to the UPF0288 family.	0.838
AKB63267.1	AKB65134.1	MSMAS_0071	MSMAS_1938	Methyl coenzyme M reductase operon protein C.	OB-fold nucleic acid binding domain protein.	0.742
AKB63268.1	AKB63267.1	MSMAS_0072	MSMAS_0071	Methyl coenzyme M reductase gamma subunit.	Methyl coenzyme M reductase operon protein C.	0.999
AKB63268.1	AKB63269.1	MSMAS_0072	MSMAS_0073	Methyl coenzyme M reductase gamma subunit.	Methyl coenzyme M reductase alpha subunit; Component of the methyl-coenzyme M reductase (MCR) I that catalyzes the reductive cleavage of methyl-coenzyme M (CoM-S-CH3 or 2- (methylthio)ethanesulfonate) using coenzyme B (CoB or 7- mercaptoheptanoylthreonine phosphate) as reductant which results in the production of methane and the mixed heterodisulfide of CoB and CoM (CoM-S-S-CoB). This is the final step in methanogenesis.	0.999
AKB63268.1	AKB63584.1	MSMAS_0072	MSMAS_0388	Methyl coenzyme M reductase gamma subunit.	Putative methanogenesis marker protein 7.	0.950
AKB63268.1	AKB63588.1	MSMAS_0072	MSMAS_0392	Methyl coenzyme M reductase gamma subunit.	Putative methanogenesis marker protein 6.	0.753
AKB63268.1	AKB63589.1	MSMAS_0072	MSMAS_0393	Methyl coenzyme M reductase gamma subunit.	Putative methanogenesis marker protein 3; Belongs to the UPF0288 family.	0.934
AKB63268.1	AKB65134.1	MSMAS_0072	MSMAS_1938	Methyl coenzyme M reductase gamma subunit.	OB-fold nucleic acid binding domain protein.	0.737
AKB63269.1	AKB63267.1	MSMAS_0073	MSMAS_0071	Methyl coenzyme M reductase alpha subunit; Component of the methyl-coenzyme M reductase (MCR) I that catalyzes the reductive cleavage of methyl-coenzyme M (CoM-S-CH3 or 2- (methylthio)ethanesulfonate) using coenzyme B (CoB or 7- mercaptoheptanoylthreonine phosphate) as reductant which results in the production of methane and the mixed heterodisulfide of CoB and CoM (CoM-S-S-CoB). This is the final step in methanogenesis.	Methyl coenzyme M reductase operon protein C.	0.999
AKB63269.1	AKB63268.1	MSMAS_0073	MSMAS_0072	Methyl coenzyme M reductase alpha subunit; Component of the methyl-coenzyme M reductase (MCR) I that catalyzes the reductive cleavage of methyl-coenzyme M (CoM-S-CH3 or 2- (methylthio)ethanesulfonate) using coenzyme B (CoB or 7- mercaptoheptanoylthreonine phosphate) as reductant which results in the production of methane and the mixed heterodisulfide of CoB and CoM (CoM-S-S-CoB). This is the final step in methanogenesis.	Methyl coenzyme M reductase gamma subunit.	0.999
AKB63269.1	AKB63584.1	MSMAS_0073	MSMAS_0388	Methyl coenzyme M reductase alpha subunit; Component of the methyl-coenzyme M reductase (MCR) I that catalyzes the reductive cleavage of methyl-coenzyme M (CoM-S-CH3 or 2- (methylthio)ethanesulfonate) using coenzyme B (CoB or 7- mercaptoheptanoylthreonine phosphate) as reductant which results in the production of methane and the mixed heterodisulfide of CoB and CoM (CoM-S-S-CoB). This is the final step in methanogenesis.	Putative methanogenesis marker protein 7.	0.950
AKB63269.1	AKB63588.1	MSMAS_0073	MSMAS_0392	Methyl coenzyme M reductase alpha subunit; Component of the methyl-coenzyme M reductase (MCR) I that catalyzes the reductive cleavage of methyl-coenzyme M (CoM-S-CH3 or 2- (methylthio)ethanesulfonate) using coenzyme B (CoB or 7- mercaptoheptanoylthreonine phosphate) as reductant which results in the production of methane and the mixed heterodisulfide of CoB and CoM (CoM-S-S-CoB). This is the final step in methanogenesis.	Putative methanogenesis marker protein 6.	0.758
AKB63269.1	AKB63589.1	MSMAS_0073	MSMAS_0393	Methyl coenzyme M reductase alpha subunit; Component of the methyl-coenzyme M reductase (MCR) I that catalyzes the reductive cleavage of methyl-coenzyme M (CoM-S-CH3 or 2- (methylthio)ethanesulfonate) using coenzyme B (CoB or 7- mercaptoheptanoylthreonine phosphate) as reductant which results in the production of methane and the mixed heterodisulfide of CoB and CoM (CoM-S-S-CoB). This is the final step in methanogenesis.	Putative methanogenesis marker protein 3; Belongs to the UPF0288 family.	0.746
AKB63269.1	AKB65134.1	MSMAS_0073	MSMAS_1938	Methyl coenzyme M reductase alpha subunit; Component of the methyl-coenzyme M reductase (MCR) I that catalyzes the reductive cleavage of methyl-coenzyme M (CoM-S-CH3 or 2- (methylthio)ethanesulfonate) using coenzyme B (CoB or 7- mercaptoheptanoylthreonine phosphate) as reductant which results in the production of methane and the mixed heterodisulfide of CoB and CoM (CoM-S-S-CoB). This is the final step in methanogenesis.	OB-fold nucleic acid binding domain protein.	0.736
AKB63584.1	AKB63267.1	MSMAS_0388	MSMAS_0071	Putative methanogenesis marker protein 7.	Methyl coenzyme M reductase operon protein C.	0.968
AKB63584.1	AKB63268.1	MSMAS_0388	MSMAS_0072	Putative methanogenesis marker protein 7.	Methyl coenzyme M reductase gamma subunit.	0.950