STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKB65152.1Putative glycogen debranching enzyme, archaeal type, TIGR01561. (659 aa)    
Predicted Functional Partners:
AKB64769.1
Glycogen phosphorylase.
 
 0.856
AKB63640.1
Alpha-amylase.
 
 
 0.790
AKB63639.1
Alpha-amylase.
 
 
 0.789
AKB63637.1
Glucoamylase.
 
  
 0.765
AKB63918.1
Hypothetical protein.
 
 0.717
AKB65151.1
Hypothetical protein.
  
  
 0.618
AKB65662.1
Glucoamylase.
 
  
 0.616
AKB65774.1
Glycosyltransferase.
 
 0.598
AKB63373.1
Glycosyltransferase (group I).
 
 0.536
AKB65772.1
Glycosyltransferase.
 
 0.525
Your Current Organism:
Methanosarcina mazei
NCBI taxonomy Id: 213585
Other names: M. mazei S-6, Methanosarcina mazei S-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.