AKB65183.1 protein (Methanosarcina mazei) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

AKB65183.1

TPR domain protein, putative component of TonB system. (1129 aa)

Predicted Functional Partners:

AKB65428.1

0.752

AKB66331.1

0.699

AKB64479.1

0.696

AKB65475.1

0.677

AKB65876.1

0.652

ndk

0.628

AKB66477.1

0.593

AKB65542.1

0.592

AKB65770.1

0.588

AKB66211.1

0.588

Your Current Organism:

Methanosarcina mazei

NCBI taxonomy Id: 213585
Other names: M. mazei S-6, Methanosarcina mazei S-6

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AKB64479.1	AKB65183.1	MSMAS_1283	MSMAS_1987	Putative ankyrin repeat protein.	TPR domain protein, putative component of TonB system.	0.696
AKB64479.1	AKB65428.1	MSMAS_1283	MSMAS_2232	Putative ankyrin repeat protein.	WD-domain containing protein.	0.903
AKB64479.1	AKB65475.1	MSMAS_1283	MSMAS_2279	Putative ankyrin repeat protein.	Chaperone protein.	0.814
AKB64479.1	AKB65876.1	MSMAS_1283	MSMAS_2680	Putative ankyrin repeat protein.	PQQ enzyme repeat domain protein.	0.893
AKB64479.1	AKB66331.1	MSMAS_1283	MSMAS_3135	Putative ankyrin repeat protein.	Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2.	0.635
AKB64479.1	AKB66477.1	MSMAS_1283	MSMAS_3281	Putative ankyrin repeat protein.	Chaperone protein.	0.796
AKB64479.1	ndk	MSMAS_1283	MSMAS_2237	Putative ankyrin repeat protein.	Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate.	0.870
AKB65183.1	AKB64479.1	MSMAS_1987	MSMAS_1283	TPR domain protein, putative component of TonB system.	Putative ankyrin repeat protein.	0.696
AKB65183.1	AKB65428.1	MSMAS_1987	MSMAS_2232	TPR domain protein, putative component of TonB system.	WD-domain containing protein.	0.752
AKB65183.1	AKB65475.1	MSMAS_1987	MSMAS_2279	TPR domain protein, putative component of TonB system.	Chaperone protein.	0.677
AKB65183.1	AKB65542.1	MSMAS_1987	MSMAS_2346	TPR domain protein, putative component of TonB system.	Thioredoxin reductase.	0.592
AKB65183.1	AKB65770.1	MSMAS_1987	MSMAS_2574	TPR domain protein, putative component of TonB system.	Glycosyltransferase.	0.588
AKB65183.1	AKB65876.1	MSMAS_1987	MSMAS_2680	TPR domain protein, putative component of TonB system.	PQQ enzyme repeat domain protein.	0.652
AKB65183.1	AKB66211.1	MSMAS_1987	MSMAS_3015	TPR domain protein, putative component of TonB system.	Glycosyl transferase family 2.	0.588
AKB65183.1	AKB66331.1	MSMAS_1987	MSMAS_3135	TPR domain protein, putative component of TonB system.	Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2.	0.699
AKB65183.1	AKB66477.1	MSMAS_1987	MSMAS_3281	TPR domain protein, putative component of TonB system.	Chaperone protein.	0.593
AKB65183.1	ndk	MSMAS_1987	MSMAS_2237	TPR domain protein, putative component of TonB system.	Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate.	0.628
AKB65428.1	AKB64479.1	MSMAS_2232	MSMAS_1283	WD-domain containing protein.	Putative ankyrin repeat protein.	0.903
AKB65428.1	AKB65183.1	MSMAS_2232	MSMAS_1987	WD-domain containing protein.	TPR domain protein, putative component of TonB system.	0.752
AKB65428.1	AKB66331.1	MSMAS_2232	MSMAS_3135	WD-domain containing protein.	Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2.	0.696